PHP :: Bug #79135 :: checking whether to build with LIBXML support How about saving the world? How can I fix this? What are the advantages of running a power tool on 240 V vs 120 V? How about saving the world? from /usr/include/libxml2/libxml/globals.h:18, How about saving the world? checking for suffix of object files o OnDebian/Ubuntu you can install using apt-get as shown in the below command: Ran into similar issue when trying to install PHP SOAP extension. Sign up for a free GitHub account to open an issue and contact its maintainers and the community. to your account. So what include directory does CMake uses for libxml2? You can confirm this on your system by checking rpm -ql libxml2-devel | grep include | head -4 if also see the include files installed in /usr/include/libxml2/libxml. Sign in Then running pkg-config --variable pc_path pkg-config gives (my highlighting): /usr/local/lib/x86_64-linux-gnu/pkgconfig:/usr/local/lib/pkgconfig:/usr/local/share/pkgconfig:/usr/lib/x86_64-linux-gnu/pkgconfig:/usr/lib/pkgconfig:/usr/share/pkgconfig. -- Generating done [ 19%] Building C object CMakeFiles/iio.dir/buffer.c.o Connect and share knowledge within a single location that is structured and easy to search. Content Discovery initiative April 13 update: Related questions using a Review our technical responses for the 2023 Developer Survey, Pipe to/from the clipboard in a Bash script. https://webkaru.net/linux/configure-error-xml2-config-found-please-check-libxml2-installation/. I installed libxml2 with brew and checked a lot of articles, but nothing helped so far. By clicking Accept all cookies, you agree Stack Exchange can store cookies on your device and disclose information in accordance with our Cookie Policy. -- Could NOT find Doxygen (missing: DOXYGEN_EXECUTABLE) ), I had this issue with PHP 7.4 build from source on Ubuntu 16.04 which I fixed by using the same way for OSX suggested above + installing dev package for libxml2-dev. Stack Exchange network consists of 181 Q&A communities including Stack Overflow, the largest, most trusted online community for developers to learn, share their knowledge, and build their careers. What to do? As brew tells you when it installs libxml2: This means that brew is not symlinking libxml2 to /usr/local/lib and /usr/local/include, and likely not linking the pkg-config file there as well, which is why libvisio can't find it. checking how to run the C preprocessor gcc -E Located parser file -I/home/kkarius/anaconda3/include/libxml2 -I/home/kkarius/anaconda3/include/parser.h trying URL 'https://cran.rstudio.com/src/contrib/XML_3.98-1.9.tar.gz' -- Found FLEX: /usr/bin/flex (found version "2.6.4") It only takes a minute to sign up. By clicking Accept all cookies, you agree Stack Exchange can store cookies on your device and disclose information in accordance with our Cookie Policy. My cmake generated path in iiod/CMakeFiles/iiod.dir/DependInfo.cmake includes /usr/inlucde/libxml2. -- Performing Test HAS_PIPE2 - Success Perl package not found with apt - Ask Ubuntu You signed in with another tab or window. It is the XML support library, and required for HTML and XML support in Emacs. -- Looking for strdup - found Checking directory of LIBXML_INCDIR Located parser file /opt/lampp/include/parser.h Checking for 1.8: /opt/lampp/include Using libxml2. While these symbols were never declared in public Does a password policy with a restriction of repeated characters increase security? [ 30%] Building C object CMakeFiles/iio.dir/sort.c.o to your account. libraries make Share Improve this question Follow [ 15%] Building C object CMakeFiles/iio.dir/context.c.o EOF, setenv LIBXML_LIBDIR /home/***/anaconda3/lib/, setenv LIBXML_INCDIR /home/***/anaconda3/include/libxml2/, * installing to library /home/***/anaconda3/lib/R/library So the other option left was to install from source. What's the cheapest way to buy out a sibling's share of our parents house if I have no cash and want to pay less than the appraised value? I'm going to close this - as I think the cross problem is in a new thread. homebrew installs libxml2 as "keg only" which means it is not symlinked to the normal /usr/local/include and /usr/local/lib directories which means nothing can find it without help. So I'm not sure if this correct behaviour, since the libxml & libusb are both in the sysroot specified in the cmake line. CMake Warning at bindings/python/CMakeLists.txt:4 (find_package): I had the same error but libxml2-dev was already installed so that didn't help. xml.c always uses /usr/include even though I set my own sysroot path. You have to ignore the suggestion from pgModeler documentation. Sign up for a free GitHub account to open an issue and contact its maintainers and the community. I used sudo apt-get install libxml2-dev and it seemed to install ok. ================================================== Thanks for contributing an answer to Ask Ubuntu! Thanks, I verified that /bin is indeed in my path. Interpreting non-statistically significant results: Do we have "no evidence" or "insufficient evidence" to reject the null? What does the power set mean in the construction of Von Neumann universe? How a top-ranked engineering school reimagined CS curriculum (Ep. checking whether we are cross compiling no So, any idea where the bug is? libxml not found when installing XML package for R - LinuxQuestions.org devtools::install("./XML", Can you still use Commanders Strike if the only attack available to forego is an attack against an ally? Who is listening on a given TCP port on Mac OS X? The text was updated successfully, but these errors were encountered: https://7me.oji.0j0.jp/2018/07/21/phpenv-build-error-memo/, configure: error: Please reinstall the libzip distribution, apt install libzip-dev "configure: error: Package requirements (blkid) were not met" Xml2 package installation issues - pkg-config PATH help While these issues shouldnt impact security, this improves robustness under BioC_mirror: https://bioconductor.org checking for sed /bin/sed -- Looking for stddef.h - found from /usr/include/libxml2/libxml/tree.h:1307, I run CentOS and have installed the libxml-devel package via yum which is encouraged online. rev2023.4.21.43403. ERROR: configuration failed for package XML but an incompatible library. By not providing "FindPython.cmake" in CMAKE_MODULE_PATH this project has Problems install R XML package on CentOS 7 - Bioconductor Embedded hyperlinks in a thesis or research paper. Sign in Connect and share knowledge within a single location that is structured and easy to search. How a top-ranked engineering school reimagined CS curriculum (Ep. By clicking Accept all cookies, you agree Stack Exchange can store cookies on your device and disclose information in accordance with our Cookie Policy. By clicking Post Your Answer, you agree to our terms of service, privacy policy and cookie policy. Tikz: Numbering vertices of regular a-sided Polygon, Embedded hyperlinks in a thesis or research paper. checking how to run the C preprocessor gcc -E I am trying to add libvisio in my mac os x from https://wiki.documentfoundation.org/DLP/Libraries/libvisio. How can I control PNP and NPN transistors together from one pin? like I said, libxml2 and libxml2-dev are already on the system. compilation terminated. no checking for xmlParseFile in -lxml. #include Worked fine on my manjaro machine with just the base-devel group installed. make[2]: *** [CMakeFiles/iio.dir/xml.c.o] Error 1. Command line sequence for building libiio: Looking for job perks? 565), Improving the copy in the close modal and post notices - 2023 edition, New blog post from our CEO Prashanth: Community is the future of AI. Like "libxml2-devel". By clicking Post Your Answer, you agree to our terms of service, privacy policy and cookie policy. I built xml.o by hand with the right paths and it worked. What is this brick with a round back and a stud on the side used for? Alternatively, you may set the environment variables LIBXML_CFLAGS and LIBXML_LIBS to avoid the need to call pkg-config. For a list of important open configure: error: "libxml not found" It doesn't mention the names "LIBXML_CFLAGS" and "LIBXML_LIBS" as far as I can see. but setting the config in the R environment doesn't help: UPDATE I already had libxml2 installed in the system see: Make sure your system has the libxml-dev or libxml2-dev package installed. I believe that libxml2 is an optional package that you can install along with Emacs. Sign up for a free GitHub account to open an issue and contact its maintainers and the community. Please check your libxml2 installation. Make sure your system has the libxml-dev or libxml2-dev package installed. Updating HTML index of packages in '.Library' * installing *source* package XML [ 22%] Building C object CMakeFiles/iio.dir/sort.c.o How can I start PostgreSQL server on Mac OS X? Did the drapes in old theatres actually say "ASBESTOS" on them? In your case, you are probably missing the libxml2-dev package. What is scrcpy OTG mode and how does it work? git clone https://github.com/analogdevicesinc/libiio.git [ 42%] Building C object CMakeFiles/iio.dir/xml.c.o When I try to do an upgrade or install something, apt (-get or aptitude) throw an error, saying that perl can't find XML/SAX/Debian.pm while trying to configure libxml-libxml-perl. How about saving the world? Stack Exchange network consists of 181 Q&A communities including Stack Overflow, the largest, most trusted online community for developers to learn, share their knowledge, and build their careers. R "DESeq2/XML"configure: error: "libxml not found" I suspect that libusb is also being found in /usr/lib. -- Looking for stdint.h - found Would you ever say "eat pig" instead of "eat pork"? Does a password policy with a restriction of repeated characters increase security? Why don'y you use the conda package for CRAN's XML (called r-xml)? -- Looking for stdint.h checking whether gcc accepts -g yes // . To subscribe to this RSS feed, copy and paste this URL into your RSS reader. Browse other questions tagged, Where developers & technologists share private knowledge with coworkers, Reach developers & technologists worldwide. I suspect that libusb is also being found in /usr/lib. Start here for a quick overview of the site, Detailed answers to any questions you might have, Discuss the workings and policies of this site. With. is a Web Designer and content creator. -- Check size of struct usb_functionfs_descs_head_v2 while building fro source, libiio seems to be unable to find libxml2, at least unter arch linux. https://github.com/analogdevicesinc/libiio/blob/master/README.md. Yet there seems to be a problem with libxml2. /tmp/RtmpY66UhU/downloaded_packages Looking for job perks? To determine what path to check, I installed locate (sudo apt install mlocate) and using locate libxml | grep '\.pc', I found that this file exists: /usr/lib/x86_64-linux-gnu/pkgconfig/libxml-2.0.pc. R itself was installed using anaconda. You can check what development packages are available for a particular library using the apt-cache search engine e.g. from /usr/include/libxml2/libxml/xmlmemory.h:218, checking for gcc gcc Sign up for a free GitHub account to open an issue and contact its maintainers and the community. -- Detecting C compile features -- Looking for strerror_r "No package libxml-2.0 installed" - Linux Mint Forums I wasn't see anyway to override this false positive libxml1 check, so a hack of a workaround you can use is to patch out that branch of the configure script. [ 26%] Building C object CMakeFiles/iio.dir/scan.c.o [root@catest php-5.5.7]# yum install libxml2-devel it should tell you what environment variables you need to set in order to find libxml2 So, armed with these last two pieces of info, you should be able to work out what you need to set and how. checking for xmlParseFile in -lxml2 yes headers, it was still possible to declare them manually. conda install -c r r-xml. So, why would I get "No package 'libxml2.0' found", and how might I fix this? You signed in with another tab or window. Already on GitHub? You can get all the above info by running: brew info libxml2. 2019/07/20 configure: error: libxml2 not found. Please check your How a top-ranked engineering school reimagined CS curriculum (Ep. Does a password policy with a restriction of repeated characters increase security? Asking for help, clarification, or responding to other answers. checking for gzopen in -lz no By clicking Post Your Answer, you agree to our terms of service, privacy policy and cookie policy. How to combine several legends in one frame? R -q --vanilla < [ 19%] Building C object CMakeFiles/iio.dir/scan.c.o ** package XML successfully unpacked and MD5 sums checked Whether you are a digital nomad or just looking for flexibility, Shells can put your Linux machine on the device that you want to use. No package 'libxml-2.0' found Consider adjusting the PKG_CONFIG_PATH environment variable if you installed software in a non-standard prefix. I wasn't see anyway to override this false positive libxml1 check, so a hack of a workaround you can use is to patch out that branch of the configure script. checking for C compiler default output file name a.out What differentiates living as mere roommates from living in a marriage-like relationship? Looking for job perks? I agree, this works for me. By clicking Post Your Answer, you agree to our terms of service, privacy policy and cookie policy. Here is the full error message : configuring libxml-libxml-perl (2.0108+dfsg-1ubuntu0.1) . thank you so much. Checking directory of LIBXML_INCDIR Unexpected uint64 behaviour 0xFFFF'FFFF'FFFF'FFFF - 1 = 0? Can't find ImageMagick with pkg-config on Ubuntu 16.04. from /usr/include/libxml2/libxml/tree.h:1307, Making statements based on opinion; back them up with references or personal experience. What's the cheapest way to buy out a sibling's share of our parents house if I have no cash and want to pay less than the appraised value? i have noticed that libxml-2.0.pc is exist in other directory i.e. libxml - pkg-config indicates libxml2 not found - Ask Ubuntu How can I control PNP and NPN transistors together from one pin? sponsoring much of the work on this release! I installed R using apt-get. checking whether the C compiler works yes error: Don't move past current position; error: Limit number of parser errors; parser: Lower entity nesting limit with XML_PARSE_HUGE; parser: Don't increase depth twice when parsing internal entities; parser: Improve detection of entity loops; parser: Only report a single entity error; libxml.h: Remove dubious definition of LIBXML_STATIC The best answers are voted up and rise to the top, Not the answer you're looking for? Hi, im getting this on installation, not sure how to resolve, could ** package XML successfully unpacked and MD5 sums checked Can you still use Commanders Strike if the only attack available to forego is an attack against an ally? has been greatly improved. Alternatively, you may set the environment variables LIBXML_CFLAGS and LIBXML_LIBS to avoid the need to call pkg-config. If pkg-config it should tell you what environment variables you need to set in order to find libxml2 So, armed with these last two pieces of info, you should be able . Can my creature spell be countered if I cast a split second spell after it? The pasted message is from Brew. As you can see, libxml2 is being found in /usr/lib and not in the sysroot defined. [ 27%] Building C object CMakeFiles/iio.dir/network.c.o [7] LC_PAPER=en_US.UTF-8 LC_NAME=C I'm a bit at a loss here, xsltproc is /usr/bin/xsltproc. All symbol information has been removed from the ELF version script to fix Why do men's bikes have high bars where you can hit your testicles while women's bikes have the bar much lower? configure: error: "libxml not found" You are missing a system requirement it seems. Ubuntu 14.04 configure: error: "libxml not found" As you can see, libxml2 is being found in /usr/lib and not in the sysroot defined. During the ./configure it will produce the following error: However I do have libxslt installed, e.g. Content Discovery initiative April 13 update: Related questions using a Review our technical responses for the 2023 Developer Survey, Error installing R 2.13.0 packages (caret) on Ubuntu 10.04, Unable to compile xps after installing ROOT, missing libraries, RCDK package installation fails in R studio. Futuristic/dystopian short story about a man living in a hive society trying to meet his dying mother. Generally to troubleshoot a configure problem, you should download the package tarball, run the installation, and inspect the config.log file. -- Looking for in6addr_any - found What does "up to" mean in "is first up to launch"? #include -- Found LibXml2: /usr/lib/x86_64-linux-gnu/libxml2.so (found version "2.9.4") Thanks for trying omphalos! [ 5%] Building C object CMakeFiles/iio.dir/channel.c.o DESeq2 . By clicking Accept all cookies, you agree Stack Exchange can store cookies on your device and disclose information in accordance with our Cookie Policy. Installing R package XML on MacOS 10.13.6 Generating points along line with specifying the origin of point generation in QGIS. -- Found Git: /usr/bin/git (found version "2.17.1") If you run: brew ls libxml2. Correct name of the libxml2 configuration file for pkg-config is libxml-2.0.pc, you have already installed it from libxml2-dev package. -- Looking for libusb-1.0 : Found Did the Golden Gate Bridge 'flatten' under the weight of 300,000 people in 1987? -- Looking for strdup Bioconductor version 3.5 (BiocInstaller 1.26.1), ?biocLite for help To learn more, see our tips on writing great answers. cmake --sysroot=${PWD}/../../../ubuntu-18.04.2-minimal-armhf-2019-02-16 ../ What are the advantages of running a power tool on 240 V vs 120 V? checking for xml2-config /home/kkarius/anaconda3/bin/xml2-config https://packages.ubuntu.com/focal/pgmodeler. [1] compiler_3.4.1 tools_3.4.1. Site design / logo 2023 Stack Exchange Inc; user contributions licensed under CC BY-SA. When a gnoll vampire assumes its hyena form, do its HP change? What differentiates living as mere roommates from living in a marriage-like relationship? BLAS: /home/kkarius/anaconda3/lib/R/lib/libRblas.so -- Performing Test HAS_WPEDANTIC I'll play around with my PATH and see if I can get it going. so I'm trying to use pkg-config, as it suggests but then getting the new error: /app/INSTALL_FILES/pkg-config-.29.2 # ./configure --with-internal-glib but I get this error when I try 'make' command: # CC=gcc # export CC # make make Upgrade Node.js to the latest version on Mac OS, Incompatible library version: nokogiri.bundle requires version 8.0.0 or later, but libiconv.2.dylib provides version 7.0.0, "code ." checking whether we are using the GNU C compiler yes Ask Ubuntu is a question and answer site for Ubuntu users and developers. Understanding the probability of measurement w.r.t. But i having problem with second command $ ./configure. Content Discovery initiative April 13 update: Related questions using a Review our technical responses for the 2023 Developer Survey, Problems compiling libjingle/gtk+-2.0 for Mac OS X, XSP Configure fails due to mono module dependancy, Error libxml-2.0 not found when installing ggiraph, How to set path pygobject Macos catalina installing PyGTK, Having Trouble Downloading Tidyverse in R, "Signpost" puzzle from Tatham's collection. how to specify which R lib to use when installing a R package? I have checked the pathname for sysroot and it is most certainly correct. 565), Improving the copy in the close modal and post notices - 2023 edition, New blog post from our CEO Prashanth: Community is the future of AI. [ 7%] Building C object CMakeFiles/iio.dir/channel.c.o [ 16%] Building C object CMakeFiles/iio.dir/utilities.c.o no checking for xmlParseFile in -lxml. Ubuntu and the circle of friends logo are trade marks of Canonical Limited and are used under licence. Well occasionally send you account related emails. make all, [ 3%] Building C object CMakeFiles/iio.dir/backend.c.o sequential (one-line) endnotes in plain tex/optex. cd build I'm using autoconf 2.69. Refactoring has begun on some buffering and encoding code with the goal of I updated my R packages the other day, and not surprisingly, one package failed to compile. installed. Trying to install the XML package as follows I get the error configure: error: "libxml not found". which indicates to me that /usr/lib/x86_64-linux-gnu/pkgconfig is already in the default path for pkg-config. Asking for help, clarification, or responding to other answers. checking for suffix of executables Well occasionally send you account related emails. The XInclude engine has been reworked to properly support nested includes. When a gnoll vampire assumes its hyena form, do its HP change? mkdir build USE_XML2 = yes privacy statement. checking for pkg-config /usr/bin/pkg-config Interpreting non-statistically significant results: Do we have "no evidence" or "insufficient evidence" to reject the null? Already on GitHub? Downloaded the latest stable version of php ie, 5.5.7 and started to compile. Have a question about this project? and false positives should be reduced. "Python_DIR" to a directory containing one of the above files. Easy way of installing it is using yum by issuing the following command on your CentOS/Fedora/RHEL Linux distributions. This doesn't work for me. Why does contour plot not show point(s) where function has a discontinuity? rev2023.4.21.43403. I've installed libxml2-dev in my Ubuntu 20.04 terminal (under WSL), as it's a requirement for pgModeler. So you have to specify the location of libxml2 when you run ./configure, just as brew and libvisio tell you to: (The paths on your system may vary, so do check! * You can also subscribe without commenting. Find centralized, trusted content and collaborate around the technologies you use most. I note there is a pkg-config file listed for libxml2 by homebrew at: which is also available via a non-version-specific symlink as: so, if you have installed pkg-config with homebrew, like this: the solution may be just to add the path for that to your PKG_CONFIG_PATH with: Note: It is only after installing pkg-config (via brew) that homebrew will display pkg-config related "caveats" for many affected packages e.g. The pgModeler instruction includes "To check if the library is correctly installed" run this command: pkg-config libxml2.0 --cflags --libs SED_EXTENDED_ARG: -E simplifying this part of the code base and improving error reporting. I really don't get why it's not building on my systems, my workaround now is to set it to REQUIRED in the CMakeList.txt file, but I honestly have no idea what exactly that changes, it just works now. Ubuntu and the circle of friends logo are trade marks of Canonical Limited and are used under licence. Can someone explain why this point is giving me 8.3V? Working PATH (for me): /usr/local/sbin:/usr/local/bin:/usr/bin:/var/lib/flatpak/exports/bin:/usr/lib/jvm/default/bin:/usr/bin/site_perl:/usr/bin/vendor_perl:/usr/bin/core_perl. I have added all dependancy described there listed bellow: After adding dependancies i am trying to run bellow commands. I can build libiio using "make all", but then "make install" fails trying to write to /usr/lib even though I've specified my own sysroot in the cmake line. checking whether we are cross compiling no Thanks for contributing an answer to Stack Overflow! To learn more, see our tips on writing great answers. density matrix, Literature about the category of finitary monads. checking for suffix of executables Malicious files should be detected reliably now Please check your libxml2 installation. If total energies differ across different software, how do I decide which software to use? During the ./configure it will produce the following error: ./configure: line 6233: AX_PROG_XSLTPROC: command not found configure: error: Cannot find xsltproc. Making statements based on opinion; back them up with references or personal experience. Could you please promote your comment as an answer so I can mark it as such? checking whether the C compiler works yes make: *** [all] Error 2. sorry for going dark on this one, I realized it was probably a problem with cmake or some other component. English version of Russian proverb "The hedgehogs got pricked, cried, but continued to eat the cactus", How to convert a sequence of integers into a monomial. issues see https://gitlab.gnome.org/GNOME/libxml2/-/issues/507, Powered by Discourse, best viewed with JavaScript enabled, https://download.gnome.org/sources/libxml2/2.11/libxml2-2.11.0.tar.xz, https://gitlab.gnome.org/GNOME/libxml2/-/issues/507. provides a separate development package or SDK, be sure it has been -- Looking for sys/types.h - found I made sure xml2 and libxml2 are installed (via sudo apt-get install) but that's not enough. Unfortunately, through yum, i couldnt upgrade php! How to access WhatsApp through Chrome Web browser?

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